5DM6 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
0


1


2


3


A


B


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


U


V


W


Z


Primary referenceCrystallographic characterization of the ribosomal binding site and molecular mechanism of action of Hygromycin A., Kaminishi T, Schedlbauer A, Fabbretti A, Brandi L, Ochoa-Lizarralde B, He CG, Milon P, Connell SR, Gualerzi CO, Fucini P, Nucleic Acids Res. 2015 Nov 16;43(20):10015-25. doi: 10.1093/nar/gkv975. Epub, 2015 Oct 12. PMID:26464437
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1755 Kb) [Save to disk]
  • Biological Unit Coordinates (5dm6.pdb1.gz) 1741 Kb
  • LPC: Ligand-Protein Contacts for 5DM6
  • CSU: Contacts of Structural Units for 5DM6
  • Structure Factors (5094 Kb)
  • Retrieve 5DM6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DM6 from S2C, [Save to disk]
  • Re-refined 5dm6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DM6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dm6] [5dm6_0] [5dm6_1] [5dm6_2] [5dm6_3] [5dm6_A] [5dm6_B] [5dm6_C] [5dm6_D] [5dm6_E] [5dm6_F] [5dm6_G] [5dm6_H] [5dm6_I] [5dm6_J] [5dm6_K] [5dm6_L] [5dm6_M] [5dm6_N] [5dm6_O] [5dm6_P] [5dm6_Q] [5dm6_R] [5dm6_S] [5dm6_T] [5dm6_U] [5dm6_V] [5dm6_W] [5dm6_X] [5dm6_Y] [5dm6_Z]
  • SWISS-PROT database:
  • Domains found in 5DM6: [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C ] by SMART

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