5DMJ		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	K	enzyme
Gene Ontology	Chain Function Process Component D, F, A
Primary reference	Functional antagonism of human CD40 achieved by targeting a unique species-specific epitope., Yamniuk AP, Suri A, Krystek SR, Tamura J, Ramamurthy V, Kuhn R, Carroll K, Fleener C, Ryseck R, Cheng L, An Y, Drew P, Grant S, Suchard SJ, Nadler SG, Bryson JW, Sheriff S, J Mol Biol. 2016 May 21. pii: S0022-2836(16)30169-3. doi:, 10.1016/j.jmb.2016.05.014. PMID:27216500

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk] Biological Unit Coordinates (5dmj.pdb1.gz) 44 Kb Biological Unit Coordinates (5dmj.pdb2.gz) 44 Kb Biological Unit Coordinates (5dmj.pdb3.gz) 43 Kb LPC: Ligand-Protein Contacts for 5DMJ CSU: Contacts of Structural Units for 5DMJ Structure Factors (308 Kb) Retrieve 5DMJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DMJ from S2C, [Save to disk] Re-refined 5dmj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DMJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dmj] [5dmj_A] [5dmj_B] [5dmj_D] [5dmj_E] [5dmj_F] [5dmj_G] SWISS-PROT database: Domains found in 5DMJ: [IGv] [TNFR ] by SMART

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