5DNB date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand MG enzyme
Primary referenceStructure of the B-DNA decamer C-C-A-A-C-G-T-T-G-G and comparison with isomorphous decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-G., Prive GG, Yanagi K, Dickerson RE, J Mol Biol 1991 Jan 5;217(1):177-99. PMID:1988677
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (10 Kb) [Save to disk]
  • Biological Unit Coordinates (5dnb.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 5DNB
  • CSU: Contacts of Structural Units for 5DNB
  • Likely Quarternary Molecular Structure file(s) for 5DNB
  • Structure Factors (71 Kb)
  • Retrieve 5DNB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DNB from S2C, [Save to disk]
  • Re-refined 5dnb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DNB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dnb] [5dnb_A]
  • SWISS-PROT database:

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