5DNJ date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 56A, 707, NH2, TPO enzyme
Primary referenceStructural basis for recognition of Emi2 by Polo-like kinase 1 and development of peptidomimetics blocking oocyte maturation and fertilization., Jia JL, Han YH, Kim HC, Ahn M, Kwon JW, Luo Y, Gunasekaran P, Lee SJ, Lee KS, Kyu Bang J, Kim NH, Namgoong S, Sci Rep. 2015 Oct 13;5:14626. doi: 10.1038/srep14626. PMID:26459104
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (5dnj.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 5DNJ
  • CSU: Contacts of Structural Units for 5DNJ
  • Structure Factors (104 Kb)
  • Retrieve 5DNJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DNJ from S2C, [Save to disk]
  • Re-refined 5dnj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DNJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dnj] [5dnj_A] [5dnj_B]
  • SWISS-PROT database:

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