5DOT date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand EDO, GOL, NI enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • endopeptidase activity


    • Primary referenceStructure of human carbamoyl phosphate synthetase: deciphering the on/off switch of human ureagenesis., de Cima S, Polo LM, Diez-Fernandez C, Martinez AI, Cervera J, Fita I, Rubio V, Sci Rep. 2015 Nov 23;5:16950. doi: 10.1038/srep16950. PMID:26592762
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (866 Kb) [Save to disk]
  • Biological Unit Coordinates (5dot.pdb1.gz) 856 Kb
  • LPC: Ligand-Protein Contacts for 5DOT
  • CSU: Contacts of Structural Units for 5DOT
  • Structure Factors (7536 Kb)
  • Retrieve 5DOT in mmCIF format [Save to disk]
  • Re-refined 5dot structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DOT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dot] [5dot_A] [5dot_B]
  • SWISS-PROT database:
  • Domains found in 5DOT: [CPSase_L_D3] [CPSase_sm_chain] [MGS ] by SMART

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