5DPM Transferase date Sep 13, 2015
title Crystal Structure Of Ubig Mutant In Complex With Sah
authors Y.Zhu, X.Jiang, X.Li, M.Teng
compound source
Molecule: Ubiquinone Biosynthesis O-Methyltransferase
Chain: A
Synonym: 2-Octaprenyl-6-Hydroxyphenol Methylase,3-Demethylu 3-O-Methyltransferase;
Ec: 2.1.1.222,2.1.1.64
Engineered: Yes
Organism_scientific: Escherichia Coli O9:H4 (Strain Hs)
Organism_taxid: 331112
Strain: Hs
Gene: Ubig, Echs_a2372
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.176 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.842 39.326 40.112 90.00 94.34 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand SAH enzyme Transferase E.C.2.1.1.222 BRENDA
Gene ECHS
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (5dpm.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 5DPM
  • CSU: Contacts of Structural Units for 5DPM
  • Structure Factors (203 Kb)
  • Retrieve 5DPM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DPM from S2C, [Save to disk]
  • Re-refined 5dpm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DPM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DPM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dpm_A] [5dpm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5DPM
  • Community annotation for 5DPM at PDBWiki (http://pdbwiki.org)

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