OCA Atlas for 5DPW

5DPW

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
K, G, A, O, I, E, M, C

Primary reference

Structural and functional analysis of the GABARAP interaction motif (GIM)., Rogov VV, Stolz A, Ravichandran AC, Rios-Szwed DO, Suzuki H, Kniss A, Lohr F, Wakatsuki S, Dotsch V, Dikic I, Dobson RC, McEwan DG, EMBO Rep. 2017 Aug;18(8):1382-1396. doi: 10.15252/embr.201643587. Epub 2017 Jun, 27. PMID:28655748

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (511 Kb) [Save to disk]

Biological Unit Coordinates (5dpw.pdb1.gz) 64 Kb

Biological Unit Coordinates (5dpw.pdb2.gz) 64 Kb

Biological Unit Coordinates (5dpw.pdb3.gz) 64 Kb

Biological Unit Coordinates (5dpw.pdb4.gz) 63 Kb

Biological Unit Coordinates (5dpw.pdb5.gz) 65 Kb

Biological Unit Coordinates (5dpw.pdb6.gz) 64 Kb

Biological Unit Coordinates (5dpw.pdb7.gz) 64 Kb

Biological Unit Coordinates (5dpw.pdb8.gz) 64 Kb

CSU: Contacts of Structural Units for 5DPW

Structure Factors (702 Kb)

Retrieve 5DPW in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5DPW from S2C, [Save to disk]

Re-refined 5dpw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DPW in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dpw_G] [5dpw_H] [5dpw_I] [5dpw_J] [5dpw] [5dpw_A] [5dpw_B] [5dpw_C] [5dpw_K] [5dpw_D] [5dpw_E] [5dpw_F] [5dpw_L] [5dpw_N] [5dpw_O] [5dpw_M] [5dpw_P]

SWISS-PROT database:

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