5DSP Lyase date Sep 17, 2015
title Structure Of Co2 Released Apo-Form Of Human Carbonic Anhydra 40 Sec Warming
authors C.U.Kim, S.Y.Park, R.Mckenna
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonate Dehydratase II,Carbonic Anhydrase C,Cac, Anhydrase II,Ca-II;
Ec: 4.2.1.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.115 R_Free 0.157
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.069 41.289 71.885 90.00 104.28 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand GOL enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTracking solvent and protein movement during CO2 release in carbonic anhydrase II crystals., Kim CU, Song H, Avvaru BS, Gruner SM, Park S, McKenna R, Proc Natl Acad Sci U S A. 2016 May 10;113(19):5257-62. doi:, 10.1073/pnas.1520786113. Epub 2016 Apr 25. PMID:27114542
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (5dsp.pdb1.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 5DSP
  • CSU: Contacts of Structural Units for 5DSP
  • Structure Factors (837 Kb)
  • Retrieve 5DSP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DSP from S2C, [Save to disk]
  • Re-refined 5dsp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DSP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5DSP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dsp_A] [5dsp]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5DSP: [Carb_anhydrase ] by SMART
    • Other resources with information on 5DSP
  • Community annotation for 5DSP at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science