5DVB date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene H834
Gene
Ontology
ChainFunctionProcessComponent
D, I, E, A, J, C, H, G, B, F
  • peroxidase activity
  • thioredoxin peroxidase activ...
  • antioxidant activity
  • peroxiredoxin activity


    • Primary referenceStructure of TSA2 reveals novel features of the active-site loop of peroxiredoxins., Nielsen MH, Kidmose RT, Jenner LB, Acta Crystallogr D Struct Biol. 2016 Jan;72(Pt 1):158-67. doi:, 10.1107/S2059798315023815. Epub 2016 Jan 1. PMID:26894543
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (292 Kb) [Save to disk]
  • Biological Unit Coordinates (5dvb.pdb1.gz) 284 Kb
  • CSU: Contacts of Structural Units for 5DVB
  • Structure Factors (2079 Kb)
  • Retrieve 5DVB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DVB from S2C, [Save to disk]
  • Re-refined 5dvb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DVB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dvb_D] [5dvb_I] [5dvb_J] [5dvb] [5dvb_A] [5dvb_B] [5dvb_C] [5dvb_E] [5dvb_F] [5dvb_G] [5dvb_H]
  • SWISS-PROT database:

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