5DVC	Transcription Transferase	date	Sep 21, 2015
title	Human Ppargamma Ligand Binding Dmain Complexed With Sb1453 I Covalent Bonded Form
authors	J.Y.Jang
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Gamma Chain: A Fragment: Unp Residues 223-505 Synonym: Ppar-Gamma,Nuclear Receptor Subfamily 1 Group C Me Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pparg, Nr1c3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta2(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28b(+)
Molecule: Nuclear Receptor Coactivator 1 Chain: B Fragment: Unp Residues 685-700 Synonym: Ncoa-1,Class E Basic Helix-Loop-Helix Protein 74,B Protein Hin-2,Rip160,Renal Carcinoma Antigen Ny-Ren-52,Ster Receptor Coactivator 1,Src-1; Ec: 2.3.1.48 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 21 21 2	R_factor 0.196 R_Free 0.241
crystal cell	length a length b length c angle alpha angle beta angle gamma 54.858 130.281 52.249 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	T53	enzyme	Transferase E.C.2.3.1.48 BRENDA
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk] Biological Unit Coordinates (5dvc.pdb1.gz) 49 Kb LPC: Ligand-Protein Contacts for 5DVC CSU: Contacts of Structural Units for 5DVC Structure Factors (258 Kb) Retrieve 5DVC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DVC from S2C, [Save to disk] Re-refined 5dvc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DVC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5DVC

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dvc_A] [5dvc] [5dvc_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5DVC: [HOLI ] by SMART

Other resources with information on 5DVC

Community annotation for 5DVC at PDBWiki (http://pdbwiki.org)

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