5DXU date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 5H5 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Rational Design of Selective Benzoxazepin Inhibitors of the alpha-Isoform of Phosphoinositide 3-Kinase Culminating in the Identification of (S)-2-((2-(1-Isopropyl-1H-1,2,4-triazol-5-yl)-5,6-dihydrobenzo[f]imidazo[1,2-d][1 ,4]oxazepin-9-yl)oxy)propanamide (GDC-0326)., Heffron TP, Heald RA, Ndubaku C, Wei B, Augistin M, Do S, Edgar K, Eigenbrot C, Friedman L, Gancia E, Jackson PS, Jones G, Kolesnikov A, Lee LB, Lesnick JD, Lewis C, McLean N, Mortl M, Nonomiya J, Pang J, Price S, Prior WW, Salphati L, Sideris S, Staben ST, Steinbacher S, Tsui V, Wallin J, Sampath D, Olivero AG, J Med Chem. 2016 Jan 20. PMID:26741947
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (378 Kb) [Save to disk]
  • Biological Unit Coordinates (5dxu.pdb1.gz) 371 Kb
  • LPC: Ligand-Protein Contacts for 5DXU
  • CSU: Contacts of Structural Units for 5DXU
  • Structure Factors (350 Kb)
  • Retrieve 5DXU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DXU from S2C, [Save to disk]
  • Re-refined 5dxu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DXU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dxu] [5dxu_A] [5dxu_B]
  • SWISS-PROT database:
  • Domains found in 5DXU: [PI3K_C2] [PI3K_p85B] [PI3K_rbd] [PI3Ka] [PI3Kc ] by SMART

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science