5DYD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 5K1 enzyme
Primary referencePredictive features of ligand-specific signaling through the estrogen receptor., Nwachukwu JC, Srinivasan S, Zheng Y, Wang S, Min J, Dong C, Liao Z, Nowak J, Wright NJ, Houtman R, Carlson KE, Josan JS, Elemento O, Katzenellenbogen JA, Zhou HB, Nettles KW, Mol Syst Biol. 2016 Apr 22;12(4):864. doi: 10.15252/msb.20156701. PMID:27107013
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk]
  • Biological Unit Coordinates (5dyd.pdb1.gz) 153 Kb
  • LPC: Ligand-Protein Contacts for 5DYD
  • CSU: Contacts of Structural Units for 5DYD
  • Structure Factors (137 Kb)
  • Retrieve 5DYD in mmCIF format [Save to disk]
  • Re-refined 5dyd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DYD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dyd] [5dyd_A] [5dyd_B] [5dyd_C] [5dyd_D]
  • SWISS-PROT database:
  • Domain found in 5DYD: [HOLI ] by SMART

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