5DYH	Metal Transport	date	Sep 24, 2015
title	Ti(Iv) Bound Human Serum Transferrin
authors	M.Saxena, S.Sharma, N.Noinaj, T.B.Parks, A.D.Tinoco
compound		source
Molecule: Serotransferrin Chain: A, B Synonym: Transferrin,Beta-1 Metal-Binding Globulin,Sideroph Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Tf, Pro1400 Expression_system: Oryza Sativa Expression_system_common: Rice Expression_system_taxid: 4530
symmetry	Space Group: P 21 21 21	R_factor 0.202 R_Free 0.237
crystal cell	length a length b length c angle alpha angle beta angle gamma 88.275 102.016 197.899 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.68 Å
ligand	4TI, CIT, CO3	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Unusual Synergism of Transferrin and Citrate in the Regulation of Ti(IV) Speciation, Transport, and Toxicity., Tinoco AD, Saxena M, Sharma S, Noinaj N, Delgado Y, Quinones Gonzalez EP, Conklin SE, Zambrana N, Loza-Rosas SA, Parks TB, J Am Chem Soc. 2016 May 4;138(17):5659-65. doi: 10.1021/jacs.6b01966. Epub 2016, Apr 26. PMID:27070073

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (630 Kb) [Save to disk] Biological Unit Coordinates (5dyh.pdb1.gz) 312 Kb Biological Unit Coordinates (5dyh.pdb2.gz) 316 Kb LPC: Ligand-Protein Contacts for 5DYH CSU: Contacts of Structural Units for 5DYH Structure Factors (1070 Kb) Retrieve 5DYH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DYH from S2C, [Save to disk] Re-refined 5dyh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DYH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5DYH

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dyh_A] [5dyh_B] [5dyh] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5DYH: [TR_FER ] by SMART

Other resources with information on 5DYH

Community annotation for 5DYH at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---