5DYO date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand FLU, SO4 enzyme
Primary referenceThree-Dimensional Structure, Binding and Spectroscopic Characteristics of the Monoclonal Antibody 43.1 Directed to the Carboxyl Phenyl Moiety of Fluorescein., Gayda S, Longenecker KL, Judge RA, Swift KM, Manoj S, Linthicum DS, Tetin SY, Biopolymers. 2016 Jan 12. doi: 10.1002/bip.22801. PMID:26756394
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (5dyo.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (5dyo.pdb2.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 5DYO
  • CSU: Contacts of Structural Units for 5DYO
  • Structure Factors (2718 Kb)
  • Retrieve 5DYO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DYO from S2C, [Save to disk]
  • Re-refined 5dyo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DYO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dyo] [5dyo_A] [5dyo_B] [5dyo_H] [5dyo_L]
  • SWISS-PROT database:
  • Domains found in 5DYO: [IG_like] [IGv ] by SMART

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