5E2M	Lyase	date	Oct 01, 2015
title	Crystal Structure Of Human Carbonic Anhydrase Isozyme I With (Cyclooctylamino)-2,5,6-Trifluoro-4-[(2-Hydroxyethyl) Sulfonyl]Benzenesulfonamide
authors	E.Manakova, A.Smirnov, S.Grazulis
compound		source
Molecule: Carbonic Anhydrase 1 Chain: A, B Fragment: Human Carbonic Anhydrase I Synonym: Carbonate Dehydratase I,Carbonic Anhydrase B,Cab,C Anhydrase I,Ca-I; Ec: 4.2.1.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ca1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: P 21 21 21	R_factor 0.182 R_Free 0.207
crystal cell	length a length b length c angle alpha angle beta angle gamma 63.264 71.710 119.722 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.41 Å
ligand	ACT, PEG, V14, ZN	enzyme	Lyase E.C.4.2.1.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Intrinsic Thermodynamics and Structures of 2,4- and 3,4-Substituted Fluorinated Benzenesulfonamides Binding to Carbonic Anhydrases., Zubriene A, Smirnov A, Dudutiene V, Timm DD, Matuliene J, Michailoviene V, Zaksauskas A, Manakova E, Grazulis S, Matulis D, ChemMedChem. 2016 Dec 21. doi: 10.1002/cmdc.201600509. PMID:28001003

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk] Biological Unit Coordinates (5e2m.pdb1.gz) 48 Kb Biological Unit Coordinates (5e2m.pdb2.gz) 49 Kb LPC: Ligand-Protein Contacts for 5E2M CSU: Contacts of Structural Units for 5E2M Structure Factors (3345 Kb) Retrieve 5E2M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5E2M from S2C, [Save to disk] Re-refined 5e2m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5E2M in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5E2M

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5e2m] [5e2m_B] [5e2m_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5E2M: [Carb_anhydrase ] by SMART

Other resources with information on 5E2M

Community annotation for 5E2M at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---