5E3X Hydrolase date Oct 05, 2015
title Crystal Structure Of Thermostable Carboxypeptidase (Fiscp) F Fervidobacterium Islandicum Aw-1
authors I.Dhanasingh, Y.J.Lee, D.W.Lee, S.H.Lee
compound source
Molecule: Thermostable Carboxypeptidase 1
Chain: A
Engineered: Yes
Organism_scientific: Fervidobacterium Islandicum
Organism_taxid: 2423
Strain: Aw-1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a(+)
symmetry Space Group: P 21 21 2
R_factor 0.177 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.105 56.757 89.183 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBiochemical and structural characterization of a keratin-degrading M32 carboxypeptidase from Fervidobacterium islandicum AW-1., Lee YJ, Dhanasingh I, Ahn JS, Jin HS, Choi JM, Lee SH, Lee DW, Biochem Biophys Res Commun. 2015 Dec 25;468(4):927-33. doi:, 10.1016/j.bbrc.2015.11.058. Epub 2015 Nov 19. PMID:26603937
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (5e3x.pdb1.gz) 170 Kb
  • LPC: Ligand-Protein Contacts for 5E3X
  • CSU: Contacts of Structural Units for 5E3X
  • Structure Factors (549 Kb)
  • Retrieve 5E3X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5E3X from S2C, [Save to disk]
  • Re-refined 5e3x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5E3X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5E3X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5e3x] [5e3x_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5E3X
  • Community annotation for 5E3X at PDBWiki (http://pdbwiki.org)

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