5E5V De Novo Protein, Membrane Protein date Oct 09, 2015
title Structure Of Amyloid Forming Peptide Nfgails (Residues 22-28 Islet Amyloid Polypeptide
authors A.B.Soriaga, R.Macdonald, M.R.Sawaya, S.Sangwan, D.Eisenberg
compound source
Molecule: Nfgails (22-28) From Islet Amyloid Polypeptide, Synthesized;
Chain: A, B
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor 0.173 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
8.661 11.594 21.552 86.39 82.21 76.35
method X-Ray Diffractionresolution 1.24 Å
Primary referenceCrystal Structures of IAPP Amyloidogenic Segments Reveal a Novel Packing Motif of Out-of-Register Beta Sheets., Soriaga AB, Sangwan S, Macdonald R, Sawaya MR, Eisenberg D, J Phys Chem B. 2015 Dec 2. PMID:26629790
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (5 Kb) [Save to disk]
  • Biological Unit Coordinates (5e5v.pdb1.gz) 7 Kb
  • CSU: Contacts of Structural Units for 5E5V
  • Structure Factors (36 Kb)
  • Retrieve 5E5V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5E5V from S2C, [Save to disk]
  • Re-refined 5e5v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5E5V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5e5v_B] [5e5v_A] [5e5v]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5E5V
  • Community annotation for 5E5V at PDBWiki (http://pdbwiki.org)

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