5E6F Viral Protein date Oct 09, 2015
title Canarypox Virus Resolvase
authors H.Li, Y.Hwang, K.Perry, F.D.Bushman, G.D.Van Duyne
compound source
Molecule: Cnpv261 Holliday Junction Resolvase Protein
Chain: A, B
Engineered: Yes
 Organism_scientific: Canarypox Virus
Organism_common: Cnpv
Organism_taxid: 44088
Gene: Cnpv261
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
symmetry Space Group: P 43 21 2
R_factor 0.223 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.117 89.117 117.945 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand MG, TAR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure and metal-binding properties of a poxvirus resolvase., Li H, Hwang Y, Perry K, Bushman F, Van Duyne GD, J Biol Chem. 2016 Mar 24. pii: jbc.M115.709139. PMID:27013661
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (5e6f.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 5E6F
  • CSU: Contacts of Structural Units for 5E6F
  • Structure Factors (216 Kb)
  • Retrieve 5E6F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5E6F from S2C, [Save to disk]
  • Re-refined 5e6f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5E6F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5E6F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5e6f_B] [5e6f_A] [5e6f]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5E6F
  • Community annotation for 5E6F at PDBWiki (http://pdbwiki.org)

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