OCA Atlas for 5E8N

5E8N

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

GOL, SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
K, H, E, B

Primary reference

The MHC Class I Cancer-Associated Neoepitope Trh4 Linked with Impaired Peptide Processing Induces a Unique Noncanonical TCR Conformer., Hafstrand I, Doorduijn EM, Duru AD, Buratto J, Oliveira CC, Sandalova T, van Hall T, Achour A, J Immunol. 2016 Jan 22. pii: 1502249. PMID:26800871

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (257 Kb) [Save to disk]

Biological Unit Coordinates (5e8n.pdb1.gz) 67 Kb

Biological Unit Coordinates (5e8n.pdb2.gz) 67 Kb

Biological Unit Coordinates (5e8n.pdb3.gz) 66 Kb

Biological Unit Coordinates (5e8n.pdb4.gz) 64 Kb

LPC: Ligand-Protein Contacts for 5E8N

CSU: Contacts of Structural Units for 5E8N

Structure Factors (5777 Kb)

Retrieve 5E8N in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5E8N from S2C, [Save to disk]

Re-refined 5e8n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5E8N in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5e8n_I] [5e8n] [5e8n_A] [5e8n_B] [5e8n_C] [5e8n_D] [5e8n_E] [5e8n_F] [5e8n_G] [5e8n_H] [5e8n_K] [5e8n_J] [5e8n_L]

SWISS-PROT database:

Domain found in 5E8N: [IGc1 ] by SMART

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