5ED1	Hydrolase Rna	date	Oct 20, 2015
title	Human Adenosine Deaminase Acting On Dsrna (Adar2) Mutant E48 To Dsrna Sequence Derived From S. Cerevisiae Bdf2 Gene
authors	M.M.Matthews, A.J.Fisher, P.A.Beal
compound		source
Molecule: Double-Stranded Rna-Specific Editase 1 Chain: A, D Fragment: A To I Editase (Unp Residues 327-729) Synonym: Adenosine Deaminase Acting On Rna Ec: 3.5.4.37 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Adar2, Drada2, Red1 Expression_system: Saccharomyces Cerevisiae Expression_system_common: Yeast Expression_system_taxid: 4932 Expression_system_strain: Bcy123 Expression_system_vector_type: Plasmid Expression_system_plasmid: Psc
Molecule: Rna (5'-R(Upupcpcpcpcpapcpapupup(8az) Pgpapcpgpupupcpapgpupc)-3'); Chain: B Engineered: Yes		Synthetic: Yes Organism_scientific: Saccharomyces Cerevisiae Organism_common: Yeast Organism_taxid: 4932
Molecule: Rna (5'- R(Gpapcpupgpapapcpgpapcpcpapapupgpupgpgp A)-3'); Chain: C Engineered: Yes		Synthetic: Yes Organism_scientific: Saccharomyces Cerevisiae Organism_common: Yeast Organism_taxid: 4932
symmetry	Space Group: P 21 21 21	R_factor 0.163 R_Free 0.223
crystal cell	length a length b length c angle alpha angle beta angle gamma 82.362 107.498 121.097 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.77 Å
ligand	8AZ, IHP, ZN	enzyme	Hydrolase E.C.3.5.4.37 BRENDA
Gene Ontology	Chain Function Process Component A, D
Primary reference	Structures of human ADAR2 bound to dsRNA reveal base-flipping mechanism and basis for site selectivity., Matthews MM, Thomas JM, Zheng Y, Tran K, Phelps KJ, Scott AI, Havel J, Fisher AJ, Beal PA, Nat Struct Mol Biol. 2016 May;23(5):426-33. doi: 10.1038/nsmb.3203. Epub 2016 Apr, 11. PMID:27065196

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (313 Kb) [Save to disk] Biological Unit Coordinates (5ed1.pdb1.gz) 303 Kb LPC: Ligand-Protein Contacts for 5ED1 CSU: Contacts of Structural Units for 5ED1 Structure Factors (1633 Kb) Retrieve 5ED1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5ED1 from S2C, [Save to disk] Re-refined 5ed1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5ED1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5ED1

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1p5ed1, region D:175-309 [Jmol] [rasmolscript] [script source]     - Domain d1w5ed1, region D:23-231 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ed1_C] [5ed1] [5ed1_D] [5ed1_A] [5ed1_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5ED1: [ADEAMc ] by SMART

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Community annotation for 5ED1 at PDBWiki (http://pdbwiki.org)

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