5EEW	Rna Binding Protein	date	Oct 23, 2015
title	Radiation Damage To The Trap-Rna Complex: Dose (Dwd) 6.45 Mg
authors	C.S.Bury, J.E.Mcgeehan, E.F.Garman, M.B.Shevtsov
compound		source
Molecule: Transcription Attenuation Protein Mtrb Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V; Fragment: Trp Rna-Binding Attenuation Protein (Trap) Synonym: Trp Rna-Binding Attenuation Protein,Trap,Tryptopha Binding Attenuator Protein; Engineered: Yes		Organism_scientific: Geobacillus Stearothermophilus Organism_taxid: 1422 Gene: Mtrb Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Sg62052pgp1-2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Ptzstmtrb
Molecule: (Gaguu)10gag 53-Nucleotide Rna Chain: W Fragment: (Gaguu)10gag 53-Nucleotide Rna Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 Other_details: Synthetic Rna. In-Vitro Transcription
symmetry	Space Group: C 1 2 1	R_factor 0.209 R_Free 0.243
crystal cell	length a length b length c angle alpha angle beta angle gamma 141.040 111.020 137.990 90.00 117.41 90.00
method	X-Ray Diffraction	resolution	1.98 Å
ligand	TRP	enzyme
Gene Ontology	Chain Function Process Component S, F, T, N, K, E, V, Q, M, C, L, A, J, O, P, B, H, D, R, I, G, U
Primary reference	RNA protects a nucleoprotein complex against radiation damage., Bury CS, McGeehan JE, Antson AA, Carmichael I, Gerstel M, Shevtsov MB, Garman EF, Acta Crystallogr D Struct Biol. 2016 May 1;72(Pt 5):648-57. doi:, 10.1107/S2059798316003351. Epub 2016 Apr 26. PMID:27139628

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (279 Kb) [Save to disk] Biological Unit Coordinates (5eew.pdb1.gz) 127 Kb Biological Unit Coordinates (5eew.pdb2.gz) 150 Kb LPC: Ligand-Protein Contacts for 5EEW CSU: Contacts of Structural Units for 5EEW Structure Factors (8669 Kb) Retrieve 5EEW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5EEW from S2C, [Save to disk] Re-refined 5eew structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5EEW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5EEW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5eew_F] [5eew_N] [5eew_P] [5eew_E] [5eew] [5eew_W] [5eew_V] [5eew_L] [5eew_R] [5eew_K] [5eew_G] [5eew_S] [5eew_A] [5eew_O] [5eew_I] [5eew_Q] [5eew_D] [5eew_C] [5eew_T] [5eew_U] [5eew_J] [5eew_B] [5eew_M] [5eew_H] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5EEW

Community annotation for 5EEW at PDBWiki (http://pdbwiki.org)

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