OCA Atlas for 5EF1

5EF1

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

TRP

enzyme

Gene
Ontology

Chain	Function	Process	Component
G, L, I, N, F, D, H, S, A, C, K, V, U, T, R, E, O, J, P, Q, B, M

Primary reference

RNA protects a nucleoprotein complex against radiation damage., Bury CS, McGeehan JE, Antson AA, Carmichael I, Gerstel M, Shevtsov MB, Garman EF, Acta Crystallogr D Struct Biol. 2016 May 1;72(Pt 5):648-57. doi:, 10.1107/S2059798316003351. Epub 2016 Apr 26. PMID:27139628

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (280 Kb) [Save to disk]

Biological Unit Coordinates (5ef1.pdb1.gz) 128 Kb

Biological Unit Coordinates (5ef1.pdb2.gz) 150 Kb

LPC: Ligand-Protein Contacts for 5EF1

CSU: Contacts of Structural Units for 5EF1

Structure Factors (8713 Kb)

Retrieve 5EF1 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5EF1 from S2C, [Save to disk]

Re-refined 5ef1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5EF1 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ef1] [5ef1_A] [5ef1_B] [5ef1_C] [5ef1_D] [5ef1_E] [5ef1_F] [5ef1_G] [5ef1_H] [5ef1_I] [5ef1_J] [5ef1_K] [5ef1_L] [5ef1_M] [5ef1_N] [5ef1_O] [5ef1_P] [5ef1_Q] [5ef1_R] [5ef1_S] [5ef1_T] [5ef1_U] [5ef1_V] [5ef1_W]

SWISS-PROT database:

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