5EGG	Transferase	date	Oct 27, 2015
title	Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch
authors	L.Zhu, H.Li, F.Wu, J.Zhu
compound		source
Molecule: Ubiquitin-Conjugating Enzyme E2 D3 Chain: A Synonym: Ubiquitin-Conjugating Enzyme Ubch5c,(E3-Independen Ubiquitin-Conjugating Enzyme D3,E2 Ubiquitin-Conjugating En Ubiquitin Carrier Protein D3,Ubiquitin-Conjugating Enzyme E Ubiquitin-Conjugating Enzyme E2-17 Kda 3,Ubiquitin-Protein Ec: 2.3.2.23,2.3.2.24 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ube2d3, Ubc5c, Ubch5c Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid
symmetry	Space Group: P 2 21 21	R_factor 0.206 R_Free 0.253
crystal cell	length a length b length c angle alpha angle beta angle gamma 28.170 66.280 76.740 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.76 Å
ligand		enzyme	Transferase E.C.2.3.2.23 BRENDA
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (5egg.pdb1.gz) 52 Kb CSU: Contacts of Structural Units for 5EGG Structure Factors (301 Kb) Retrieve 5EGG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5EGG from S2C, [Save to disk] Re-refined 5egg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5EGG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5EGG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5egg_A] [5egg] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5EGG: [UBCc ] by SMART

Other resources with information on 5EGG

Community annotation for 5EGG at PDBWiki (http://pdbwiki.org)

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