5EH0 Transferase date Oct 27, 2015
title Rapid Discovery Of Pyrido[3,4-D]Pyrimidine Inhibitors Of Mon Spindle Kinase 1 (Mps1) Using A Structure-Based Hydridizati Approach
authors P.Innocenti, H.L.Woodward, S.Solanki, N.Naud, I.M.Westwood, N.Cro A.Hayes, J.Roberts, A.T.Henley, R.Baker, A.Faisal, G.Mak, G.Box, M A.De Haven Brandon, L.O'Fee, J.Saville, J.Schmitt, R.Burke, R.L. Montfort, F.I.Raymaud, S.A.Eccles, S.Linardopoulos, J.Blagg, S.H
compound source
Molecule: Dual Specificity Protein Kinase Ttk
Chain: A
Synonym: Phosphotyrosine Picked Threonine-Protein Kinase,Py
Ec: 2.7.12.1
Engineered: Yes
Other_details: N8-Neopentyl-N2-(2-Methoxy-4-(1-Methyl-1h-Py Yl)Phenyl)Pyrido[3,4-D]Pyrimidine-2,8-Diamine
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ttk, Mps1, Mps1l1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
symmetry Space Group: I 2 2 2
R_factor 0.196 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.420 105.920 112.210 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.18 Å
ligand 5NW, DMS enzyme Transferase E.C.2.7.12.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRapid Discovery of Pyrido[3,4-d]pyrimidine Inhibitors of Monopolar Spindle Kinase 1 (MPS1) Using a Structure-Based Hybridization Approach., Innocenti P, Woodward HL, Solanki S, Naud S, Westwood IM, Cronin N, Hayes A, Roberts J, Henley AT, Baker R, Faisal A, Mak GW, Box G, Valenti M, De Haven Brandon A, O'Fee L, Saville H, Schmitt J, Matijssen B, Burke R, van Montfort RL, Raynaud FI, Eccles SA, Linardopoulos S, Blagg J, Hoelder S, J Med Chem. 2016 Apr 28;59(8):3671-88. doi: 10.1021/acs.jmedchem.5b01811. Epub, 2016 Apr 7. PMID:27055065
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (5eh0.pdb1.gz) 174 Kb
  • LPC: Ligand-Protein Contacts for 5EH0
  • CSU: Contacts of Structural Units for 5EH0
  • Structure Factors (488 Kb)
  • Retrieve 5EH0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EH0 from S2C, [Save to disk]
  • Re-refined 5eh0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EH0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EH0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5eh0_A] [5eh0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5EH0: [S_TKc ] by SMART
  • Other resources with information on 5EH0
  • Community annotation for 5EH0 at PDBWiki (http://pdbwiki.org)

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