5EHG	Transferase	date	Oct 28, 2015
title	Dengue 3 Ns5 Methyltransferase Bound To S-Adenosyl Methionin Molecule Bf341
authors	K.Barral, G.Bricogne, A.Sharff
compound		source
Molecule: Rna-Directed Rna Polymerase Ns5 Chain: A, C Ec: 3.4.21.91,3.6.1.15,3.6.4.13,2.1.1.56,2.1.1.57,2.7.7.48 Engineered: Yes		Organism_scientific: Dengue Virus Type 3 (Strain Philippinesh871956); Organism_common: Denv-3 Organism_taxid: 408870 Strain: Philippinesh871956 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_variant: Rosetta Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmcox20a
symmetry	Space Group: P 21 21 2	R_factor 0.170 R_Free 0.229
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.145 185.730 52.072 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.02 Å
ligand	5O0, SAM	enzyme	Hydrolase E.C.3.4.21.91 BRENDA
Gene Ontology	Chain Function Process Component A, C
Primary reference	Discovery of novel dengue virus NS5 methyltransferase non-nucleoside inhibitors by fragment-based drug design., Benmansour F, Trist I, Coutard B, Decroly E, Querat G, Brancale A, Barral K, Eur J Med Chem. 2016 Oct 5;125:865-880. doi: 10.1016/j.ejmech.2016.10.007. PMID:27750202

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk] Biological Unit Coordinates (5ehg.pdb1.gz) 89 Kb Biological Unit Coordinates (5ehg.pdb2.gz) 87 Kb LPC: Ligand-Protein Contacts for 5EHG CSU: Contacts of Structural Units for 5EHG Structure Factors (2484 Kb) Retrieve 5EHG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5EHG from S2C, [Save to disk] Re-refined 5ehg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5EHG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5EHG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ehg_C] [5ehg_A] [5ehg] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5EHG

Community annotation for 5EHG at PDBWiki (http://pdbwiki.org)

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