5EMZ Signaling Protein date Nov 07, 2015
title Crystal Structure Of K48-Linked Diubiquitin With F45w Mutati Proximal Unit
authors M.A.Nakasone, P.J.Paukstelis, D.Fushman
compound source
Molecule: Polyubiquitin-B
Chain: A, C, E
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ubb
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Polyubiquitin-B
Chain: B, D, F
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ubb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.171 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.870 78.920 91.510 90.00 97.93 90.00
method X-Ray Diffractionresolution 1.66 Å
ligand SO4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (5emz.pdb1.gz) 30 Kb
  • Biological Unit Coordinates (5emz.pdb2.gz) 29 Kb
  • Biological Unit Coordinates (5emz.pdb3.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 5EMZ
  • CSU: Contacts of Structural Units for 5EMZ
  • Structure Factors (564 Kb)
  • Retrieve 5EMZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EMZ from S2C, [Save to disk]
  • Re-refined 5emz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5EMZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5EMZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5emz_F] [5emz] [5emz_C] [5emz_A] [5emz_D] [5emz_E] [5emz_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5EMZ: [UBQ ] by SMART
    • Other resources with information on 5EMZ
  • Community annotation for 5EMZ at PDBWiki (http://pdbwiki.org)

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