5EOB	Transferase	date	Nov 10, 2015
title	Crystal Structure Of Cmet In Complex With Novel Inhibitor
authors	Q.Liu, T.Chen, Y.Xu
compound		source
Molecule: Hepatocyte Growth Factor Receptor Chain: A Fragment: Unp Residues 1038-1346 Synonym: Hgf Receptor,Hgfsf Receptor,Proto-Oncogene C-Met, Factor Receptor,Sf Receptor,Tyrosine-Protein Kinase Met; Ec: 2.7.10.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Met Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: P 1 21 1	R_factor 0.173 R_Free 0.197
crystal cell	length a length b length c angle alpha angle beta angle gamma 37.880 43.390 86.080 90.00 92.68 90.00
method	X-Ray Diffraction	resolution	1.75 Å
ligand	5QQ	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Multisubstituted quinoxalines and pyrido[2,3-d]pyrimidines: Synthesis and SAR study as tyrosine kinase c-Met inhibitors., Wu K, Ai J, Liu Q, Chen T, Zhao A, Peng X, Wang Y, Ji Y, Yao Q, Xu Y, Geng M, Zhang A, Bioorg Med Chem Lett. 2012 Oct 15;22(20):6368-72. doi:, 10.1016/j.bmcl.2012.08.075. Epub 2012 Aug 27. PMID:22985853

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk] Biological Unit Coordinates (5eob.pdb1.gz) 48 Kb LPC: Ligand-Protein Contacts for 5EOB CSU: Contacts of Structural Units for 5EOB Structure Factors (865 Kb) Retrieve 5EOB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5EOB from S2C, [Save to disk] Re-refined 5eob structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5EOB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5EOB

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5eob_A] [5eob] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5EOB: [TyrKc ] by SMART

Other resources with information on 5EOB

Community annotation for 5EOB at PDBWiki (http://pdbwiki.org)

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