5EP2 Transcription Transcription Inhibitor date Nov 11, 2015
title Quorum-Sensing Signal Integrator Luxo - Catalytic Domain In With Azau Inhibitor
authors T.Shah, H.B.Selcuk, P.D.Jeffrey, F.M.Hughson
compound source
Molecule: Putative Repressor Protein Luxo
Chain: A
Fragment: Aaa+ Catalytic Domain (Unp Residues 141-387)
Engineered: Yes
 Organism_scientific: Photobacterium Angustum
Organism_taxid: 661
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21b
symmetry Space Group: P 61
R_factor 0.160 R_Free 0.184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.403 76.403 82.255 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.42 Å
ligand ACT, AZU enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure, Regulation, and Inhibition of the Quorum-Sensing Signal Integrator LuxO., Boyaci H, Shah T, Hurley A, Kokona B, Li Z, Ventocilla C, Jeffrey PD, Semmelhack MF, Fairman R, Bassler BL, Hughson FM, PLoS Biol. 2016 May 24;14(5):e1002464. doi: 10.1371/journal.pbio.1002464., eCollection 2016 May. PMID:27219477
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (5ep2.pdb1.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 5EP2
  • CSU: Contacts of Structural Units for 5EP2
  • Structure Factors (1035 Kb)
  • Retrieve 5EP2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EP2 from S2C, [Save to disk]
  • Re-refined 5ep2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5EP2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5EP2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ep2_A] [5ep2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5EP2: [AAA ] by SMART
    • Other resources with information on 5EP2
  • Community annotation for 5EP2 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science