5ERW Viral Protein Immune System date Nov 15, 2015
title Structure Of Hcv E2 Glycoprotein Antigenic Epitope II Bound Broadly Neutralizing Antibody Hc84-26
authors M.Gao, R.Mariuzza
compound source
Molecule: Anti-Hcv E2 Fab Hc84-26 Heavy Chain
Chain: A
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet26b

Molecule: Anti-Hcv E2 Fab Hc84-26 Light Chain
Chain: B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet26b

Molecule: Hcv E2 Glycoprotein Epitope II
Chain: C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Hepatitis C Virus
Organism_taxid: 11103
symmetry Space Group: P 2 21 21
R_factor 0.215 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.700 101.240 180.320 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (5erw.pdb1.gz) 70 Kb
  • CSU: Contacts of Structural Units for 5ERW
  • Structure Factors (325 Kb)
  • Retrieve 5ERW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ERW from S2C, [Save to disk]
  • Re-refined 5erw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5ERW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5ERW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5erw_A] [5erw_B] [5erw_C] [5erw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5ERW: [IG_like] [IGv ] by SMART
    • Other resources with information on 5ERW
  • Community annotation for 5ERW at PDBWiki (http://pdbwiki.org)

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