5F2S date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 5TZ, CL, DMS, EDO, ZN enzyme
Primary reference8-Substituted Pyrido[3,4-d]pyrimidin-4(3H)-one Derivatives As Potent, Cell Permeable, KDM4 (JMJD2) and KDM5 (JARID1) Histone Lysine Demethylase Inhibitors., Bavetsias V, Lanigan RM, Ruda GF, Atrash B, McLaughlin MG, Tumber A, Mok NY, Le Bihan YV, Dempster S, Boxall KJ, Jeganathan F, Hatch SB, Savitsky P, Velupillai S, Krojer T, England KS, Sejberg J, Thai C, Donovan A, Pal A, Scozzafava G, Bennett JM, Kawamura A, Johansson C, Szykowska A, Gileadi C, Burgess-Brown NA, von Delft F, Oppermann U, Walters Z, Shipley J, Raynaud FI, Westaway SM, Prinjha RK, Fedorov O, Burke R, Schofield CJ, Westwood IM, Bountra C, Muller S, van Montfort RL, Brennan PE, Blagg J, J Med Chem. 2016 Jan 7. PMID:26741168
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (488 Kb) [Save to disk]
  • Biological Unit Coordinates (5f2s.pdb1.gz) 120 Kb
  • Biological Unit Coordinates (5f2s.pdb2.gz) 126 Kb
  • Biological Unit Coordinates (5f2s.pdb3.gz) 124 Kb
  • Biological Unit Coordinates (5f2s.pdb4.gz) 126 Kb
  • LPC: Ligand-Protein Contacts for 5F2S
  • CSU: Contacts of Structural Units for 5F2S
  • Structure Factors (2626 Kb)
  • Retrieve 5F2S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5F2S from S2C, [Save to disk]
  • Re-refined 5f2s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5F2S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5f2s] [5f2s_A] [5f2s_B] [5f2s_C] [5f2s_D]
  • SWISS-PROT database:
  • Domains found in 5F2S: [JmjC] [JmjN ] by SMART

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