5F64 Transcription Regulator date Dec 05, 2015
title Putative Positive Transcription Regulator (Sensor Evgs) From Flexneri
authors B.Nocek, J.Osipiuk, R.Mulligan, M.Gu, W.F.Anderson, A.Joachimiak, For Structural Genomics Of Infectious Diseases (Csgid)
compound source
Molecule: Positive Transcription Regulator Evga
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Shigella Flexneri 2a Str. 2457t
Organism_taxid: 198215
Strain: 2457t
Gene: Evga
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: C 1 2 1
R_factor 0.183 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
168.485 110.867 110.769 90.00 126.74 90.00
method X-Ray Diffractionresolution 2.71 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (265 Kb) [Save to disk]
  • Biological Unit Coordinates (5f64.pdb1.gz) 130 Kb
  • Biological Unit Coordinates (5f64.pdb2.gz) 132 Kb
  • CSU: Contacts of Structural Units for 5F64
  • Structure Factors (1051 Kb)
  • Retrieve 5F64 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5F64 from S2C, [Save to disk]
  • Re-refined 5f64 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5F64 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5F64
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5f64_C] [5f64] [5f64_D] [5f64_B] [5f64_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5F64: [HTH_LUXR] [REC ] by SMART
    • Other resources with information on 5F64
  • Community annotation for 5F64 at PDBWiki (http://pdbwiki.org)

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