5F99 X-ray Structure of the MMTV-A Nucleosome Core Particle date
authors Frouws, T.D., Richmond, T.J.
compound source
symmetry
R_factor
R_Free 0.2522
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.63
ligand CL, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


Primary referenceX-ray structure of the MMTV-A nucleosome core., Frouws TD, Duda SC, Richmond TJ, Proc Natl Acad Sci U S A. 2016 Jan 19. pii: 201524607. PMID:26787910
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (278 Kb) [Save to disk]
  • Biological Unit Coordinates (5f99.pdb1.gz) 271 Kb
  • LPC: Ligand-Protein Contacts for 5F99
  • CSU: Contacts of Structural Units for 5F99
  • Structure Factors (507 Kb)
  • Retrieve 5F99 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5F99 from S2C, [Save to disk]
  • Re-refined 5f99 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5F99 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5F99
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5f99 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5f99_F] [5f99_J] [5f99_C] [5f99_D] [5f99_I] [5f99] [5f99_A] [5f99_E] [5f99_B] [5f99_G] [5f99_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5F99: [H2A] [H2B] [H3] [H4 ] by SMART
  • Other resources with information on 5F99
  • Community annotation for 5F99 at PDBWiki (http://pdbwiki.org)

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