5F99	Dna Binding Protein	date	Dec 09, 2015
title	X-Ray Structure Of The Mmtv-A Nucleosome Core Particle
authors	T.D.Frouws, T.J.Richmond
compound		source
Molecule: Histone H3.2 Chain: A, E Engineered: Yes Mutation: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Plyss Expression_system_plasmid: Pet3a
Molecule: Histone H4 Chain: B, F Engineered: Yes Mutation: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Plyss Expression_system_plasmid: Pet3a
Molecule: Histone H2a Type 1 Chain: C, G Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Plyss Expression_system_plasmid: Pet3a
Molecule: Histone H2b 1.1 Chain: D, H Synonym: H2b1.1 Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Plyss Expression_system_plasmid: Pet3a
Molecule: Dna (147-Mer) Chain: I Engineered: Yes		Organism_scientific: Mouse Mammary Tumor Virus Organism_taxid: 11757 Expression_system: Escherichia Coli Expression_system_taxid: 316385 Expression_system_strain: Dh10b Expression_system_plasmid: Puc57
Molecule: Dna (147-Mer) Chain: J Engineered: Yes		Organism_scientific: Mouse Mammary Tumor Virus Organism_taxid: 11757 Expression_system: Escherichia Coli Expression_system_taxid: 316385 Expression_system_strain: Dh10b Expression_system_plasmid: Puc57
symmetry	Space Group: P 21 21 21	R_factor 0.175 R_Free 0.252
crystal cell	length a length b length c angle alpha angle beta angle gamma 107.873 178.915 109.061 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.63 Å
ligand	CL, MG	enzyme
Gene Ontology	Chain Function Process Component A, E C, G F, B H, D
Primary reference	X-ray structure of the MMTV-A nucleosome core., Frouws TD, Duda SC, Richmond TJ, Proc Natl Acad Sci U S A. 2016 Jan 19. pii: 201524607. PMID:26787910

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (274 Kb) [Save to disk] Biological Unit Coordinates (5f99.pdb1.gz) 267 Kb LPC: Ligand-Protein Contacts for 5F99 CSU: Contacts of Structural Units for 5F99 Structure Factors (507 Kb) Retrieve 5F99 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5F99 from S2C, [Save to disk] Re-refined 5f99 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5F99 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5F99

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5f99_F] [5f99_J] [5f99_C] [5f99_D] [5f99_I] [5f99] [5f99_A] [5f99_E] [5f99_B] [5f99_G] [5f99_H] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5F99: [H2A] [H2B] [H3] [H4 ] by SMART

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