OCA Atlas for 5FB9

5FB9

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BTB, NA, NAG, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, A	nuclease activity endonuclease activity

Primary reference

Structural and Catalytic Properties of S1 Nuclease from Aspergillus oryzae Responsible for Substrate Recognition, Cleavage, Non-Specificity, and Inhibition., Koval T, Ostergaard LH, Lehmbeck J, Norgaard A, Lipovova P, Duskova J, Skalova T, Trundova M, Kolenko P, Fejfarova K, Stransky J, Svecova L, Hasek J, Dohnalek J, PLoS One. 2016 Dec 30;11(12):e0168832. doi: 10.1371/journal.pone.0168832., eCollection 2016. PMID:28036383

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]

Biological Unit Coordinates (5fb9.pdb1.gz) 52 Kb

Biological Unit Coordinates (5fb9.pdb2.gz) 52 Kb

LPC: Ligand-Protein Contacts for 5FB9

CSU: Contacts of Structural Units for 5FB9

Structure Factors (4130 Kb)

Retrieve 5FB9 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5FB9 from S2C, [Save to disk]

Re-refined 5fb9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5FB9 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5fb9] [5fb9_A] [5fb9_B]

SWISS-PROT database:

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