5FFV Transcription date Dec 19, 2015
title Crystal Structure Of The Bromodomain Of Human Brpf1 In Compl H3k14ac Histone Peptide
authors C.Tallant, G.Nunez-Alonso, P.Savitsky, T.Krojer, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, S.Knapp
compound source
Molecule: Peregrin
Chain: A, B
Fragment: Unp Residues 626-740
Synonym: Bromodomain And Phd Finger-Containing Protein 1,Pr Br140;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brpf1, Br140
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4

Molecule: Histone H3
Chain: C, D
Fragment: Unp Residues 10-20
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 2
R_factor 0.190 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.266 74.354 49.509 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand ALY, EDO enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (5ffv.pdb1.gz) 42 Kb
  • Biological Unit Coordinates (5ffv.pdb2.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 5FFV
  • CSU: Contacts of Structural Units for 5FFV
  • Structure Factors (1449 Kb)
  • Retrieve 5FFV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FFV from S2C, [Save to disk]
  • Re-refined 5ffv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5FFV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5FFV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ffv_C] [5ffv_B] [5ffv_A] [5ffv] [5ffv_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5FFV: [BROMO ] by SMART
    • Other resources with information on 5FFV
  • Community annotation for 5FFV at PDBWiki (http://pdbwiki.org)

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