5FG4 Transcription date Dec 20, 2015
title Crystal Structure Of The Bromodomain Of Human Brpf1 In Compl Of-1 Chemical Probe
authors C.Tallant, D.R.Owen, B.S.Gerstenberger, P.Savitsky, A.Chaikuad, O G.Nunez-Alonso, P.Filippakopoulos, F.Von Delft, C.H.Arrowsmith A.M.Edwards, C.Bountra, S.Muller, S.Knapp
compound source
Molecule: Peregrin
Chain: A
Synonym: Bromodomain And Phd Finger-Containing Protein 1,Pr Br140;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brpf1, Br140
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: I 1 2 1
R_factor 0.200 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.802 60.704 51.171 90.00 100.43 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand 5XE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (5fg4.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 5FG4
  • CSU: Contacts of Structural Units for 5FG4
  • Structure Factors (369 Kb)
  • Retrieve 5FG4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FG4 from S2C, [Save to disk]
  • Re-refined 5fg4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5FG4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5FG4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fg4] [5fg4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5FG4: [BROMO ] by SMART
    • Other resources with information on 5FG4
  • Community annotation for 5FG4 at PDBWiki (http://pdbwiki.org)

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