5FGB	Immune System	date	Dec 20, 2015
title	Three Dimensional Structure Of Broadly Neutralizing Human An Hepatitis C Virus (Hcv) Glycoprotein E2 Fab Fragment Hc33.4
authors	C.Girard-Blanc, F.A.Rey, T.Krey
compound		source
Molecule: Anti-Hcv E2 Fab Hc84-1 Light Chain Chain: A, B Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Drosophila Expression_system_taxid: 7215 Expression_system_cell_line: Schneider 2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmtbip Modified
Molecule: Anti-Hcv E2 Fab Hc84-1 Heavy Chain Chain: C, E Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Drosophila Expression_system_taxid: 7215 Expression_system_cell_line: Schneider 2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmtbip Modified
Molecule: Genome Polyprotein Chain: F, G Ec: 3.4.22.-,3.4.21.98,3.6.1.15,3.6.4.13,2.7.7.48 Engineered: Yes		Synthetic: Yes Organism_scientific: Hepatitis C Virus Genotype 1a (Isolate Organism_common: Hcv Organism_taxid: 11108 Other_details: Fragment Residues 406-425 Of Hcv Strain H77 Polyprotein
symmetry	Space Group: P 1 21 1	R_factor 0.171 R_Free 0.190
crystal cell	length a length b length c angle alpha angle beta angle gamma 49.810 149.430 67.950 90.00 90.08 90.00
method	X-Ray Diffraction	resolution	1.65 Å
ligand	GOL, SO4	enzyme	Hydrolase E.C.3.4.22 BRENDA
Primary reference	Antibody response to the hypervariable region-1 interferes with broadly neutralizing antibodies to hepatitis C virus., Keck ZY, Girard-Blanc C, Wang W, Lau P, Zuiani A, Rey FA, Krey T, Diamond MS, Foung SK, J Virol. 2016 Jan 6. pii: JVI.02458-15. PMID:26739044

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (283 Kb) [Save to disk] Biological Unit Coordinates (5fgb.pdb1.gz) 141 Kb Biological Unit Coordinates (5fgb.pdb2.gz) 138 Kb LPC: Ligand-Protein Contacts for 5FGB CSU: Contacts of Structural Units for 5FGB Structure Factors (1055 Kb) Retrieve 5FGB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5FGB from S2C, [Save to disk] Re-refined 5fgb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5FGB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5FGB

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5fgb_E] [5fgb_A] [5fgb] [5fgb_F] [5fgb_B] [5fgb_C] [5fgb_G] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5FGB: [IG_like] [IGv ] by SMART

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