5FOQ Hydrolase date Nov 25, 2015
title Acetylcholinesterase In Complex With C7653
authors L.Berg, B.K.Mishra, D.C.Andersson, F.Ekstrom, A.Linusson
compound source
Molecule: Acetylcholinesterase
Chain: A, B
Fragment: Catalytic Domain, 1-548
Ec: 3.1.1.7
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.192 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.020 111.770 227.090 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand GC8, NAG, P15, PG0 enzyme Hydrolase E.C.3.1.1.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe Nature of Activated Non-classical Hydrogen Bonds: A Case Study on Acetylcholinesterase-Ligand Complexes., Berg L, Mishra BK, Andersson CD, Ekstrom F, Linusson A, Chemistry. 2016 Feb;22(8):2672-81. doi: 10.1002/chem.201503973. Epub 2016 Jan 11. PMID:26751405
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (367 Kb) [Save to disk]
  • Biological Unit Coordinates (5foq.pdb1.gz) 350 Kb
  • LPC: Ligand-Protein Contacts for 5FOQ
  • CSU: Contacts of Structural Units for 5FOQ
  • Structure Factors (1544 Kb)
  • Retrieve 5FOQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FOQ from S2C, [Save to disk]
  • Re-refined 5foq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FOQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FOQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5foq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5foq_A] [5foq] [5foq_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5FOQ
  • Community annotation for 5FOQ at PDBWiki (http://pdbwiki.org)

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