5FP0 Hydrolase date Nov 26, 2015
title Ligand Complex Structure Of Soluble Epoxide Hydrolase
authors Y.Xue, T.Olsson, C.A.Johansson, L.Oster, H.G.Beisel, M.Rohman, D.K S.Backstrom
compound source
Molecule: Bifunctional Epoxide Hydrolase 2
Chain: A
Synonym: Cytosolic Epoxide Hydrolase 2, Ceh, Epoxide Hydrat Soluble Epoxide Hydrolase, Seh, Lipid-Phosphate Phosphatas
Ec: 3.3.2.10, 3.1.3.76
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 65 2 2
R_factor 0.1702 R_Free 0.2304
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.510 92.510 244.830 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.35 Å
ligand DMS, SZC enzyme Hydrolase E.C.3.3.2.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFragment Screening of Soluble Epoxide Hydrolase for Lead Generation-Structure-Based Hit Evaluation and Chemistry Exploration., Xue Y, Olsson T, Johansson CA, Oster L, Beisel HG, Rohman M, Karis D, Backstrom S, ChemMedChem. 2016 Feb 4. doi: 10.1002/cmdc.201500575. PMID:26845235
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (5fp0.pdb1.gz) 190 Kb
  • LPC: Ligand-Protein Contacts for 5FP0
  • CSU: Contacts of Structural Units for 5FP0
  • Structure Factors (446 Kb)
  • Retrieve 5FP0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FP0 from S2C, [Save to disk]
  • Re-refined 5fp0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FP0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FP0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fp0_A] [5fp0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5FP0
  • Community annotation for 5FP0 at PDBWiki (http://pdbwiki.org)

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