5FPU	Transcription	date	Dec 03, 2015
title	Crystal Structure Of Human Jarid1b In Complex With Gskj1
authors	V.Srikannathasan, R.Nowak, C.Johansson, C.Gileadi, F.Von Delft, C.H.Arrowsmith, C.Bountra, A.Edwards, U.Oppermann
compound		source
Molecule: Lysine-Specific Demethylase 5b Chain: A Fragment: Jmjc Domain, Residues 26-772 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfb-Lic-Bse
symmetry	Space Group: P 65 2 2	R_factor 0.190 R_Free 0.221
crystal cell	length a length b length c angle alpha angle beta angle gamma 141.660 141.660 151.980 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.24 Å
ligand	EDO, EPE, K0I, MN, PO4, ZN	enzyme
Primary reference	Structural analysis of human KDM5B guides histone demethylase inhibitor development., Johansson C, Velupillai S, Tumber A, Szykowska A, Hookway ES, Nowak RP, Strain-Damerell C, Gileadi C, Philpott M, Burgess-Brown N, Wu N, Kopec J, Nuzzi A, Steuber H, Egner U, Badock V, Munro S, LaThangue NB, Westaway S, Brown J, Athanasou N, Prinjha R, Brennan PE, Oppermann U, Nat Chem Biol. 2016 May 23. doi: 10.1038/nchembio.2087. PMID:27214403

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk] Biological Unit Coordinates (5fpu.pdb1.gz) 168 Kb LPC: Ligand-Protein Contacts for 5FPU CSU: Contacts of Structural Units for 5FPU Structure Factors (756 Kb) Retrieve 5FPU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5FPU from S2C, [Save to disk] Re-refined 5fpu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5FPU in 3D

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Visual 3D analysis of 5FPU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5fpu_A] [5fpu] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5FPU: [JmjC] [JmjN ] by SMART

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