5FTM Hydrolase date Jan 14, 2016
title Cryo-Em Structure Of Human P97 Bound To Atpgs (Conformation
authors S.Banerjee, A.Bartesaghi, A.Merk, P.Rao, S.L.Bulfer, Y.Yan, N.Gree B.Mroczkowski, R.J.Neitz, P.Wipf, V.Falconieri, R.J.Deshaies, J.L.S.Milne, D.Huryn, M.Arkin, S.Subramaniam
compound source
Molecule: Transitional Endoplasmic Reticulum Atpase
Chain: A, B, C, D, E, F
Synonym: Ter Atpase, 15s Mg(2+)-Atpase P97 Subunit, Valosin Containing Protein, Vcp, P97 Vcp Transitional Endoplasmic R Atpase;
Ec: 3.6.4.6
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta2
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.20 Å
ligand ADP, AGS, MG enzyme Hydrolase E.C.3.6.4.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B
  • deubiquitinase activator act...


    • Primary reference2.3 A resolution cryo-EM structure of human p97 and mechanism of allosteric inhibition., Banerjee S, Bartesaghi A, Merk A, Rao P, Bulfer SL, Yan Y, Green N, Mroczkowski B, Neitz RJ, Wipf P, Falconieri V, Deshaies RJ, Milne JL, Huryn D, Arkin M, Subramaniam S, Science. 2016 Jan 28. pii: aad7974. PMID:26822609
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (711 Kb) [Save to disk]
  • Biological Unit Coordinates (5ftm.pdb1.gz) 702 Kb
  • LPC: Ligand-Protein Contacts for 5FTM
  • CSU: Contacts of Structural Units for 5FTM
  • Retrieve 5FTM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FTM from S2C, [Save to disk]
    • View 5FTM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5FTM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ftm] [5ftm_E] [5ftm_F] [5ftm_C] [5ftm_D] [5ftm_A] [5ftm_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5FTM: [AAA] [CDC48_2] [CDC48_N ] by SMART
    • Other resources with information on 5FTM
  • Community annotation for 5FTM at PDBWiki (http://pdbwiki.org)

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