OCA Atlas for 5FU6

5FU6

Gene Regulation

date

Jan 21, 2016

title

Not Module Of The Human Ccr4-Not Complex (Crystallization Mu

authors

T.Raisch, D.Bhandari, K.Sabath, S.Helms, E.Valkov, O.Weichenriede E.Izaurralde

compound

source

Molecule: Ccr4-Not Transcription Complex Subunit 1
Chain: A, D
Fragment: Not1 Superfamily Homology Domain, Residues 1833-2
Synonym: Ccr4-Associated Factor 1, Negative Regulator Of Transcription Subunit 1 Homolog, Not1h, Hnot1, Cnot1;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petmcn(Pnyc)

Molecule: Ccr4-Not Transcription Complex Subunit 2
Chain: B, E
Fragment: Not Anchor Region And Not-Box Domain, Residues 35
Synonym: Ccr4-Associated Factor 2, Cnot2
Engineered: Yes

Molecule: Ccr4-Not Transcription Complex Subunit 3
Chain: C, F
Fragment: Not Anchor Region And Not-Box Domain, Residues 60
Synonym: Ccr4-Associated Factor 3, Leukocyte Receptor Clust 2, Cnot3;
Engineered: Yes

symmetry

Space Group: P 1 21 1

R_factor

0.181

R_Free

0.221

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
75.980	135.320	101.330	90.00	107.67	90.00

method

X-Ray Diffraction

resolution

2.90 Å

Gene
Ontology

Chain	Function	Process	Component
A, D
F, C, E, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (595 Kb) [Save to disk]

Biological Unit Coordinates (5fu6.pdb1.gz) 297 Kb

Biological Unit Coordinates (5fu6.pdb2.gz) 295 Kb

CSU: Contacts of Structural Units for 5FU6

Structure Factors (385 Kb)

Retrieve 5FU6 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5FU6 from S2C, [Save to disk]

Re-refined 5fu6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5FU6 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5FU6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5fu6_F] [5fu6] [5fu6_A] [5fu6_B] [5fu6_C] [5fu6_D] [5fu6_E]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 5FU6

Community annotation for 5FU6 at PDBWiki (http://pdbwiki.org)

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