OCA Atlas for 5FV9

5FV9

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

EDO, GOL, MN, UDP, Y6W

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, B, E, A, D, F

Primary reference

Glycomimetics Targeting Glycosyltransferases: Synthetic, Computational and Structural Studies of Less-Polar Conjugates., Ghirardello M, de Las Rivas M, Lacetera A, Delso I, Lira-Navarrete E, Tejero T, Martin-Santamaria S, Hurtado-Guerrero R, Merino P, Chemistry. 2016 May 17;22(21):7215-24. doi: 10.1002/chem.201600467. Epub 2016 Apr, 13. PMID:27071848

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (985 Kb) [Save to disk]

Biological Unit Coordinates (5fv9.pdb1.gz) 321 Kb

Biological Unit Coordinates (5fv9.pdb2.gz) 333 Kb

Biological Unit Coordinates (5fv9.pdb3.gz) 336 Kb

Biological Unit Coordinates (5fv9.pdb4.gz) 336 Kb

LPC: Ligand-Protein Contacts for 5FV9

CSU: Contacts of Structural Units for 5FV9

Structure Factors (12039 Kb)

Retrieve 5FV9 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5FV9 from S2C, [Save to disk]

Re-refined 5fv9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5FV9 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5fv9] [5fv9_A] [5fv9_B] [5fv9_C] [5fv9_D] [5fv9_E] [5fv9_F]

SWISS-PROT database:

Domain found in 5FV9: [RICIN ] by SMART

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