5G38 Photosynthesis date Apr 24, 2016
title Psbo Subunit Of Photosystem II, Beta Barrel Domain At 100k,
authors M.Bommer, A.N.Bondar, A.Zouni, H.Dobbek, H.Dau
compound source
Molecule: Photosystem II Manganese-Stabilizing Polypeptide
Chain: A
Fragment: Beta Barrel Domain, Residues 45-272
Engineered: Yes
Other_details: Loops 55-63,149-192 And 220-231 Deleted
Organism_scientific: Thermosynechococcus Elongatus
Organism_taxid: 197221
Strain: Bp-1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet-28a
symmetry Space Group: P 61 2 2
R_factor 0.158 R_Free 0.184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.436 54.436 191.759 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.15 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystallographic and Computational Analysis of the Barrel Part of the PsbO Protein of Photosystem II: Carboxylate-Water Clusters as Putative Proton Transfer Relays and Structural Switches., Bommer M, Bondar AN, Zouni A, Dobbek H, Dau H, Biochemistry. 2016 Aug 9. PMID:27454911
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (5g38.pdb1.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 5G38
  • CSU: Contacts of Structural Units for 5G38
  • Structure Factors (529 Kb)
  • Retrieve 5G38 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5G38 from S2C, [Save to disk]
  • Re-refined 5g38 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5G38 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5G38
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5g38_A] [5g38]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5G38
  • Community annotation for 5G38 at PDBWiki (http://pdbwiki.org)

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