5G49 Transcription date May 06, 2016
title Crystal Structure Of The Arabodopsis Thaliana Histone-Fold D Nf-Yc3
authors N.Gnesutta, D.Saad, A.Chaves-Sanjuan, R.Mantovani, M.Nardini
compound source
Molecule: Nuclear Transcription Factor Y Subunit B-6
Chain: A
Fragment: Histone-Fold Domain, Residues 55-147
Synonym: At-L1l, Atnf-Yb-6, Protein Leafy Cotyledon 1-Like
Engineered: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nuclear Transcription Factor Y Subunit C-3
Chain: B
Fragment: Histone-Fold Domain, Residues 55-148
Synonym: Atnf-Yc-3, At-Nf-Yc3
Engineered: Yes

Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.162 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.344 81.691 95.998 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand ACT, CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceCrystal structure of the Arabidopsis thaliana L1L/NF-YC3 histone-fold dimer reveals specificities of the LEC1 family of NF-Y subunits in plants., Gnesutta N, Saad D, Chaves-Sanjuan A, Mantovani R, Nardini M, Mol Plant. 2016 Nov 18. pii: S1674-2052(16)30276-3. doi:, 10.1016/j.molp.2016.11.006. PMID:27871811
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (5g49.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 5G49
  • CSU: Contacts of Structural Units for 5G49
  • Structure Factors (194 Kb)
  • Retrieve 5G49 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5G49 from S2C, [Save to disk]
  • Re-refined 5g49 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5G49 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5G49
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5g49] [5g49_B] [5g49_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5G49
  • Community annotation for 5G49 at PDBWiki (http://pdbwiki.org)

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