5G4X Structural Protein date May 17, 2016
title The Crystal Structure Of The Shank3 N-Terminus
authors T.Zacharchenko, I.Barsukov
compound source
Molecule: Sh3 And Multiple Ankyrin Repeat Domains Protein 3
Chain: A
Fragment: Spn-Arr, Residues 1-348
Synonym: Shank3, Proline-Rich Synapse-Associated Protein 2, Spank-2, Shank3
 Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
symmetry Space Group: P 41 21 2
R_factor 0.163 R_Free 0.186
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.760 86.760 158.730 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.17 Å
ligand EDO enzyme
Primary referenceSHANK proteins limit integrin activation by directly interacting with Rap1 and R-Ras., Lilja J, Zacharchenko T, Georgiadou M, Jacquemet G, Franceschi N, Peuhu E, Hamidi H, Pouwels J, Martens V, Nia FH, Beifuss M, Boeckers T, Kreienkamp HJ, Barsukov IL, Ivaska J, Nat Cell Biol. 2017 Mar 6. doi: 10.1038/ncb3487. PMID:28263956
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk]
  • Biological Unit Coordinates (5g4x.pdb1.gz) 120 Kb
  • LPC: Ligand-Protein Contacts for 5G4X
  • CSU: Contacts of Structural Units for 5G4X
  • Structure Factors (354 Kb)
  • Retrieve 5G4X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5G4X from S2C, [Save to disk]
  • Re-refined 5g4x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5G4X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5G4X
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5g4x_A] [5g4x]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5G4X
  • Community annotation for 5G4X at PDBWiki (http://pdbwiki.org)

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