5G57	Hydrolase	date	May 22, 2016
title	Crystal Structure Of T. Brucei Pde-B1 Catalytic Domain With Npd-001
authors	A.K.Singh, D.G.Brown
compound		source
Molecule: Phosphodiesterase B1 Chain: A, B Fragment: Catalytic Domain, Unp Residues 565-918 Ec: 3.1.4.- Engineered: Yes		Organism_scientific: Trypanosoma Brucei Organism_taxid: 5691 Strain: Lister 427 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_vector: Pet28a
symmetry	Space Group: C 1 2 1	R_factor 0.159 R_Free 0.183
crystal cell	length a length b length c angle alpha angle beta angle gamma 116.420 115.090 68.760 90.00 108.08 90.00
method	X-Ray Diffraction	resolution	1.73 Å
ligand	6M5, FMT, GAI, GOL, MG, PEG, ZN	enzyme	Hydrolase E.C.3.1.4 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Targeting a Subpocket in Trypanosoma brucei Phosphodiesterase B1 (TbrPDEB1) Enables the Structure-Based Discovery of Selective Inhibitors with Trypanocidal Activity., Blaazer AR, Singh AK, de Heuvel E, Edink E, Orrling KM, Veerman JJN, van den Bergh T, Jansen C, Balasubramaniam E, Mooij WJ, Custers H, Sijm M, Tagoe DNA, Kalejaiye TD, Munday JC, Tenor H, Matheeussen A, Wijtmans M, Siderius M, de Graaf C, Maes L, de Koning HP, Bailey DS, Sterk GJ, de Esch IJP, Brown DG, Leurs R, J Med Chem. 2018 May 1. doi: 10.1021/acs.jmedchem.7b01670. PMID:29672041

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk] Biological Unit Coordinates (5g57.pdb1.gz) 63 Kb Biological Unit Coordinates (5g57.pdb2.gz) 61 Kb LPC: Ligand-Protein Contacts for 5G57 CSU: Contacts of Structural Units for 5G57 Structure Factors (4762 Kb) Retrieve 5G57 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5G57 from S2C, [Save to disk]

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5g57_A] [5g57_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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