5GAF date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GNP, MG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q


R
  • translation repressor activi...


    • S


    T


    U


    V


    W


    X


    Y


    Z


    a


    b


    c


    d


    e


    f


    i


    Primary referenceStructures of the E. coli translating ribosome with SRP and its receptor and with the translocon., Jomaa A, Boehringer D, Leibundgut M, Ban N, Nat Commun. 2016 Jan 25;7:10471. doi: 10.1038/ncomms10471. PMID:26804923
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1608 Kb) [Save to disk]
  • Biological Unit Coordinates (5gaf.pdb1.gz) 1590 Kb
  • LPC: Ligand-Protein Contacts for 5GAF
  • CSU: Contacts of Structural Units for 5GAF
  • Retrieve 5GAF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GAF from S2C, [Save to disk]
    • View 5GAF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gaf] [5gaf_1] [5gaf_2] [5gaf_A] [5gaf_B] [5gaf_C] [5gaf_D] [5gaf_E] [5gaf_F] [5gaf_G] [5gaf_H] [5gaf_I] [5gaf_J] [5gaf_K] [5gaf_L] [5gaf_M] [5gaf_N] [5gaf_O] [5gaf_P] [5gaf_Q] [5gaf_R] [5gaf_S] [5gaf_T] [5gaf_U] [5gaf_V] [5gaf_W] [5gaf_X] [5gaf_Y] [5gaf_Z] [5gaf_a] [5gaf_b] [5gaf_c] [5gaf_d] [5gaf_e] [5gaf_f] [5gaf_i] [5gaf_k]
  • SWISS-PROT database:
  • Domains found in 5GAF: [AAA] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [SRP54] [SRP54_N ] by SMART

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