5GAM date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GTP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


C


b


d


e


f


g


h


j


Primary referenceCryo-EM structure of the yeast U4/U6.U5 tri-snRNP at 3.7 A resolution., Nguyen TH, Galej WP, Bai XC, Oubridge C, Newman AJ, Scheres SH, Nagai K, Nature. 2016 Feb 18;530(7590):298-302. doi: 10.1038/nature16940. Epub 2016 Feb 1. PMID:26829225
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (387 Kb) [Save to disk]
  • Biological Unit Coordinates (5gam.pdb1.gz) 378 Kb
  • LPC: Ligand-Protein Contacts for 5GAM
  • CSU: Contacts of Structural Units for 5GAM
  • Retrieve 5GAM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GAM from S2C, [Save to disk]
    • View 5GAM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gam] [5gam_A] [5gam_C] [5gam_U] [5gam_W] [5gam_b] [5gam_d] [5gam_e] [5gam_f] [5gam_g] [5gam_h] [5gam_j] [5gam_x]
  • SWISS-PROT database:
  • Domains found in 5GAM: [EFG_C] [EFG_IV] [Sm ] by SMART

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