5GAP date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
A
  • metallopeptidase activity


    • B


    D


    F


    G


    H


    J


    K


    Primary referenceCryo-EM structure of the yeast U4/U6.U5 tri-snRNP at 3.7 A resolution., Nguyen TH, Galej WP, Bai XC, Oubridge C, Newman AJ, Scheres SH, Nagai K, Nature. 2016 Feb 18;530(7590):298-302. doi: 10.1038/nature16940. Epub 2016 Feb 1. PMID:26829225
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (657 Kb) [Save to disk]
  • Biological Unit Coordinates (5gap.pdb1.gz) 638 Kb
  • CSU: Contacts of Structural Units for 5GAP
  • Retrieve 5GAP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GAP from S2C, [Save to disk]
    • View 5GAP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gap] [5gap_A] [5gap_B] [5gap_D] [5gap_F] [5gap_G] [5gap_H] [5gap_J] [5gap_K] [5gap_U] [5gap_V] [5gap_W] [5gap_x]
  • SWISS-PROT database:
  • Domains found in 5GAP: [AAA] [DEXDc] [DIM1] [HAT] [HELICc] [JAB_MPN] [NOSIC] [SFM] [Sec63] [TPR] [WD40 ] by SMART

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