5GGT Immune System date Jun 16, 2016
title Pd-L1 In Complex With Bms-936559 Fab
authors Y.S.Heo
compound source
Molecule: Programmed Cell Death 1 Ligand 1
Chain: A
Fragment: Unp Residues 18-134
Synonym: Programmed Death Ligand 1,B7 Homolog 1,B7-H1
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cd274, B7h1, Pdcd1l1, Pdcd1lg1, Pdl1
Expression_system: Escherichia Coli-Pichia Pastoris Shuttle Ppparg4;
Expression_system_taxid: 1182032

Molecule: Igg H Chain
Chain: H
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Igk@ Protein
Chain: L
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.211 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.199 91.555 164.156 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk]
  • Biological Unit Coordinates (5ggt.pdb1.gz) 171 Kb
  • CSU: Contacts of Structural Units for 5GGT
  • Structure Factors (374 Kb)
  • Retrieve 5GGT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GGT from S2C, [Save to disk]
  • Re-refined 5ggt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5GGT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5GGT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ggt] [5ggt_A] [5ggt_H] [5ggt_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5GGT: [IG] [IG_like] [IGv ] by SMART
    • Other resources with information on 5GGT
  • Community annotation for 5GGT at PDBWiki (http://pdbwiki.org)

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